2018 – PhD in Computer Science, University of Houston, Houston, TX 2014 – BS in Biology, University of Houston, Houston, TX
Our laboratory specializes in the research areas of Bioinformatics,
Applied Statistics, Data Science and Machine Learning. We are
particularly interested in integration of multi-omics data and
electronic medical records for health care related decision support. Our
focus includes the development of new methodologies, analysis and
interpretation of high throughput sequencing (genomics, transcriptomics,
Golovko G*, Khanipov K*, Albayrak L, Nia A, Fofanov Y. Identification of complex multidimensional patterns in microbial communities. BMC Microbiome. 2020.
Patterson EI, Khanipov K,
Swetnam DM, Walsdorf S, Kautz TF, Thangamani S, Fofanov Y, Forrester
NL. Measuring Alphavirus Fidelity Using Non-Infectious Virus Particles. Viruses. 2020 May;12(5):546.
Nia AM, Chen T, Barnette BL, Khanipov K,
Ullrich RL, Bhavnani SK, Emmett MR. Efficient identification of
multiple pathways: RNA-Seq analysis of livers from 56 Fe ion irradiated
mice. BMC bioinformatics. 2020 Dec;21(1):1-2.
Malania L*, Bai Y*, Khanipov K*,
Tsereteli M, Metreveli M, Tsereteli D, Sidamonidze K, Imnadze P,
Fofanov Y, Kosoy M. Janibacter species with evidence of genomic
polymorphism isolated from resected heart valve in a patient with aortic
stenosis. Infectious Disease Reports. 2019 Aug 29;11(1).
Albayrak L, Khanipov K, Golovko G, Fofanov Y. Broom: Application for non-redundant storage of High Throughput Sequencing data. Bioinformatics. 2019 Jan 1;1:35.
Hegde S*, Khanipov K*,
Albayrak L, Golovko G, Pimenova M, Saldaña M, Rojas M, Hornett E, Motl
G, Fredregill C, Dennett J. Microbiome interaction networks and
community structure from laboratory-reared and field-collected Aedes
aegypti, Aedes albopictus, and Culex quinquefasciatus mosquito vectors. Frontiers in microbiology. 2018 September 10;9:2160.
Patterson EI*, Khanipov K*,
Rojas MM, Kautz TF, Rockx-Brouwer D, Golovko G, Albayrak L, Fofanov Y,
Forrester NL. Mosquito bottlenecks alter viral mutant swarm in a tissue
and time-dependent manner with contraction and expansion of variant
positions and diversity. Virus evolution. 2018 Feb 15;4(1):vey001.