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Selected Publications by SCSB Faculty

Last Updated April 2023


  • Paranjpe MN, Marina VI, Grachev AA, Maviza TP, Tolicheva OA, Paleskava A, Osterman IA, Sergiev PV, Konevega AL, Polikanov YS, Gagnon MG. Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin. Nucleic Acids Res. 2023 Jan 11;51(1):449-462. doi: 10.1093/nar/gkac1189.
  • Wang X, Bigman LS, Greenblatt HM, Yu B, Levy Y, Iwahara J. Negatively charged, intrinsically disordered regions can accelerate target search by DNA-binding proteins. Nucleic Acids Res. 2023 Feb 13:gkad045. doi: 10.1093/nar/gkad045.
  • Yu B, Wang X, Wang T, Iwahara J. DNA base order parameter determination without influence of chemical exchange. Methods. 2023 Feb;210:1-9. doi: 10.1016/j.ymeth.2022.12.004.
  • Odunuga OO, Oberhauser AF. Beyond Chaperoning: UCS Proteins Emerge as Regulators of Myosin-Mediated Cellular Processes. Subcell Biochem. 2023;101:189-211. doi: 10.1007/978-3-031-14740-1_7.
  • Thompson S, Pang CY, Sepuru KM, Cambier S, Hellyer TP, Scott J, Simpson AJ, Proost P, Kirby JA, Rajarathnam K, Sheerin NS, Ali S. Nitration of chemokine CXCL8 acts as a natural mechanism to limit acute inflammation. Cell Mol Life Sci. 2023 Jan 9;80(1):35. doi: 10.1007/s00018-022-04663-x.
  • Pomin VH, Rajarathnam K. NMR Methods for Characterization of Glycosaminoglycan-Chemokine Interactions. Methods Mol Biol. 2023;2597:143-157. doi: 10.1007/978-1-0716-2835-5_12.
  • Sung PY, Zhou Y, Kao CC, Aburigh AA, Routh A, Roy P. A multidisciplinary approach to the identification of the protein-RNA connectome in double-stranded RNA virus capsids. Nucleic Acids Res. 2023 Apr 18:gkad274. doi: 10.1093/nar/gkad274.
  • Sotcheff S, Zhou Y, Yeung J, Sun Y, Johnson JE, Torbett BE, Routh AL. ViReMa: a virus recombination mapper of next-generation sequencing data characterizes diverse recombinant viral nucleic acids. Gigascience. 2023 Mar 20;12:giad009. doi: 10.1093/gigascience/giad009.
  • Schindewolf C, Lokugamage K, Vu MN, Johnson BA, Scharton D, Plante JA, Kalveram B, Crocquet-Valdes PA, Sotcheff S, Jaworski E, Alvarado RE, Debbink K, Daugherty MD,Weaver SC, Routh AL, Walker DH, Plante KS, Menachery VD. SARS-CoV-2 Uses Nonstructural Protein 16 To Evade Restriction by IFIT1 and IFIT3. J Virol. 2023 Feb 28;97(2):e0153222. doi: 10.1128/jvi.01532-22.
  • Lee H, Chofflet N, Liu J, Fan S, Lu Z, Resua Rojas M, Penndorf P, Bailey AO, Russell WK, Machius M, Ren G, Takahashi H, Rudenko G. Designer molecules of the synaptic organizer MDGA1 reveal 3D conformational control of biological function. J Biol Chem. 2023 Apr;299(4):104586. doi: 10.1016/j.jbc.2023.104586.
  • Sowers ML, Conrad JW, Chang-Gu B, Cherryhomes E, Hackfeld LC, Sowers LC. DNA Base Excision Repair Intermediates Influence Duplex-Quadruplex Equilibrium. Molecules. 2023 Jan 18;28(3):970. doi: 10.3390/molecules28030970.
  • Baljinnyam T, Conrad JW, Sowers ML, Chang-Gu B, Herring JL, Hackfeld LC, Zhang K, Sowers LC. Characterization of a Novel Thermostable DNA Lyase Used To Prepare DNA for Next-Generation Sequencing. Chem Res Toxicol. 2023 Feb 20;36(2):162-176. doi: 10.1021/acs.chemrestox.2c00172.
  • Jones RG 3rd, Dimet-Wiley A, Haghani A, da Silva FM, Brightwell CR, Lim S, Khadgi S, Wen Y, Dungan CM, Brooke RT, Greene NP, Peterson CA, McCarthy JJ, Horvath S, Watowich SJ, Fry CS, Murach KA. A molecular signature defining exercise adaptation with ageing and in vivo partial reprogramming in skeletal muscle. J Physiol. 2023 Feb;601(4):763-782. doi: 10.1113/JP283836.
  • Reyna RA, Weaver SC. Sequelae and Animal Modeling of Encephalitic Alphavirus Infections. Viruses. 2023 Jan 28;15(2):382. doi: 10.3390/v15020382.
  • Park J, Baruch-Torres N, Yin YW. Structural and Molecular Basis for Mitochondrial DNA Replication and Transcription in Health and Antiviral Drug Toxicity. Molecules. 2023 Feb 14;28(4):1796. doi: 10.3390/molecules28041796.