Publications

ALERT BAR

Selected Publications by SCSB Faculty

Last Updated March 2022

2022

  • Negi SS, Schein CH, Braun W. Regional and temporal coordinated mutation patterns in SARS-CoV-2 spike protein revealed by a clustering and network analysis. Sci Rep. 2022 Jan 21;12(1):1128. doi: 10.1038/s41598-022-04950-4.
  • Yu B, Bien KG, Pletka CC, Iwahara J. Dynamics of Cations around DNA and Protein as Revealed by 23Na Diffusion NMR Spectroscopy. Anal Chem. 2022 Feb 8;94(5):2444-2452. doi: 10.1021/acs.analchem.1c04197.
  • Yu B, Pletka CC, Iwahara J. Protein Electrostatics Investigated through Paramagnetic NMR for Nonpolar Groups. J Phys Chem B. 2022 Mar 10. doi: 10.1021/acs.jpcb.1c10930.
  • Jacob H, Geng H, Shetty D, Halow N, Kenney LJ, Nakano MM. Distinct Interaction Mechanism of RNA Polymerase and ResD at Proximal and Distal Subsites for Transcription Activation of Nitrite Reductase in Bacillus subtilis. J Bacteriol. 2022 Feb 15;204(2):e0043221. doi: 10.1128/JB.00432-21.
  • Dutta AK, Sepuru KM, Rösgen J, Rajarathnam K. Characterizing Thermodynamics of Protein-Glycosaminoglycan Interactions Using Isothermal Titration Calorimetry. Methods Mol Biol. 2022;2303:307-317. doi: 10.1007/978-1-0716-1398-6_25.
  • Joseph PRB, Sepuru KM, Poluri KM, Rajarathnam K. Solution NMR Spectroscopy for Characterizing Protein-Glycosaminoglycan Interactions. Methods Mol Biol. 2022;2303:13-23. doi: 10.1007/978-1-0716-1398-6_2.
  • Wang S, Sotcheff SL, Gallardo CM, Jaworski E, Torbett BE, Routh AL. Covariation of viral recombination with single nucleotide variants during virus evolution revealed by CoVaMa. Nucleic Acids Res. 2022 Jan 8:gkab1259. doi: 10.1093/nar/gkab1259.
  • Wang YH, Ho TLF, Hariharan A, Goh HC, Wong YL, Verkaik NS, Lee MY, Tam WL, van Gent DC, Venkitaraman AR, Sheetz MP, Lane DP. Rapid recruitment of p53 to DNA damage sites directs DNA repair choice and integrity. Proc Natl Acad Sci U S A. 2022 Mar 8;119(10):e2113233119. doi: 10.1073/pnas.2113233119.
  • Yang YA, Nguyen E, Sankara Narayana GHN, Heuzé M, Fu C, Yu H, Mège RM, Ladoux B, Sheetz MP. Local contractions regulate E-cadherin rigidity sensing. Sci Adv. 2022 Jan 28;8(4):eabk0387. doi: 10.1126/sciadv.abk0387.
  • Liu Y, Liu J, Shi PY. SARS-CoV-2 variants and vaccination. Zoonoses (Burlingt). 2022;2(1):6. doi: 10.15212/zoonoses-2022-0001.
  • Xia H, Zou J, Kurhade C, Cai H, Yang Q, Cutler M, Cooper D, Muik A, Jansen KU, Xie X, Swanson KA, Shi PY. Neutralization and durability of 2 or 3 doses of the BNT162b2 vaccine against Omicron SARS-CoV-2. Cell Host Microbe. 2022 Feb 18:S1931-3128(22)00101-9. doi: 10.1016/j.chom.2022.02.015.
  • Zou J, Xia H, Xie X, Kurhade C, Machado RRG, Weaver SC, Ren P, Shi PY. Neutralization against Omicron SARS-CoV-2 from previous non-Omicron infection. Nat Commun. 2022 Feb 9;13(1):852. doi: 10.1038/s41467-022-28544-w.
  • Fang FF, Shi PY. Omicron: a drug developer's perspective. Emerg Microbes Infect. 2022 Dec;11(1):208-211. doi: 10.1080/22221751.2021.2023330.
  • Hsu CW, Sowers ML, Baljinnyam T, Herring JL, Hackfeld LC, Tang H, Zhang K, Sowers LC. Measurement of deaminated cytosine adducts in DNA using a novel hybrid thymine DNA glycosylase. J Biol Chem. 2022 Mar;298(3):101638. doi: 10.1016/j.jbc.2022.101638.
  • LaForce GR, Farr JS, Liu J, Akesson C, Gumus E, Pinkard O, Miranda HC, Johnson K, Sweet TJ, Ji P, Lin A, Coller J, Philippidou P, Wagner EJ, Schaffer AE. Suppression of premature transcription termination leads to reduced mRNA isoform diversity and neurodegeneration. Neuron. 2022 Feb 4:S0896-6273(22)00057-5. doi: 10.1016/j.neuron.2022.01.018.
  • Dimet-Wiley A, Golovko G, Watowich SJ. One-Year Postfracture Mortality Rate in Older Adults With Hip Fractures Relative to Other Lower Extremity Fractures: Retrospective Cohort Study. JMIR Aging. 2022 Mar 16;5(1):e32683. doi: 10.2196/32683.
  • Murach KA, Dimet-Wiley AL, Wen Y, Brightwell CR, Latham CM, Dungan CM, Fry CS, Watowich SJ. Late-life exercise mitigates skeletal muscle epigenetic aging. Aging Cell. 2022 Jan;21(1):e13527. doi: 10.1111/acel.13527.
  • Liu Y, Liu J, Plante KS, Plante JA, Xie X, Zhang X, Ku Z, An Z, Scharton D, Schindewolf C, Widen SG, Menachery VD, Shi PY, Weaver SC. The N501Y spike substitution enhances SARS-CoV-2 infection and transmission. Nature. 2022 Feb;602(7896):294-299. doi: 10.1038/s41586-021-04245-0.
  • Nielsen MC, Machado RRG, Mitchell BM, McConnell AJ, Saada NI, Weaver SC, Ren P. A Comparison of Seegene Technologies Novaplex SARS-CoV-2 Variants I, II, and IV Assays with Spike Gene Sequencing for Detection of Known Severe Acute Respiratory Syndrome Coronavirus 2 Variants. J Mol Diagn. 2022 Feb 24:S1525-1578(22)00040-X. doi: 10.1016/j.jmoldx.2022.02.001.
  • Weldon CT, Weaver SC, Jacobsen KH. Impact of COVID-19 on the Vector-Borne Disease Research and Applied Public Health Workforce in the United States. Am J Trop Med Hyg. 2022 Feb 22:tpmd211340. doi: 10.4269/ajtmh.21-1340.
  • Clark LE, Clark SA, Lin C, Liu J, Coscia A, Nabel KG, Yang P, Neel DV, Lee H, Brusic V, Stryapunina I, Plante KS, Ahmed AA, Catteruccia F, Young-Pearse TL, Chiu IM, Llopis PM, Weaver SC, Abraham J. VLDLR and ApoER2 are receptors for multiple alphaviruses. Nature. 2022 Feb;602(7897):475-480. doi:10.1038/s41586-021-04326-0.